I had a vaughly similar problem like this: Existing hard drive in hole 1 on mother board, existing DVD drive in hole 2.
Plug in a new hd into hole 3.
Grub thinks it's sdb, i.e. the second hd, as I wished, but Debian thinks it's sda.
All that was needed was to plug the new hd into 2 and put the DVD drive into 3.
Don't know if this might help? Aren't you being a bit ambitious putting them both in? Perhaps get one working and then put the second in??
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